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Selecting barcoding loci for plants Artículos académico

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Resumen

  • There has been considerable debate, but little consensus regarding locus choice for DNA barcoding land plants. This is partly attributable to a shortage of comparable data from all proposed candidate loci on a common set of samples. In this study, we evaluated the seven main candidate plastid regions (rpoC1, rpoB, rbcL, matK, trnH-psbA, atpF-atpH, psbK-psbI) in three divergent groups of land plants [Inga (angiosperm); Araucaria (gymnosperm); Asterella s.l. (liverwort)]. Across these groups, no single locus showed high levels of universality and resolvability. Interspecific sharing of sequences from individual loci was common. However, when multiple loci were combined, fewer barcodes were shared among species. Evaluation of the performance of previously published suggestions of particular multilocus barcode combinations showed broadly equivalent performance. Minor improvements on these were obtained by various new three-locus combinations involving rpoC1, rbcL, matK and trnH-psbA, but no single combination clearly outperformed all others. In terms of absolute discriminatory power, promising results occurred in liverworts (e.g. c. 90% species discrimination based on rbcL alone). However, Inga (rapid radiation) and Araucaria (slow rates of substitution) represent challenging groups for DNA barcoding, and their corresponding levels of species discrimination reflect this (upper estimate of species discrimination = 69% in Inga and only 32% in Araucaria; mean = 60% averaging all three groups).

Área temática

  • Vida de ecosistemas terrestres

autores

  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Alex Andra Clark
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    David G. Long
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    James Richardson
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Laura L. Forrest
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Mark W. Chase
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Michelle L. Hollingsworth
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Myriam Gaudeul
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Peter M Hollingsworth
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    R. Toby Pennington
  • http://research-hub.urosario.edu.co/ontology/vlocal#ExcludedPerson
    Robyn Cowan

Publicado en

  • Molecular Ecology Resources Revistas

fecha de publicación

  • marzo 2009

Identidad

Identificador de objeto digital (DOI)

  • https://doi.org/10.1111/j.1755-0998.2008.02439.x

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  • 19

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