selected publications academic article The structure of associations: Method insights from analyzing 28 clinical isolates of Cryptococcus neoformans 2023-3-2 New Histoplasma diagnostic assays designed via whole genome comparisons 2021-7-9 Hypertension and the roles of the 9p21.3 risk locus 2020-12-1 Mitochondrial Genome Sequences of the Emerging Fungal Pathogen Candida auris 2020-10-27 Updates and Comparative Analysis of the Mitochondrial Genomes of Paracoccidioides spp. Using Oxford Nanopore MinION Sequencing 2020-1-1 The LUFS domain, its transcriptional regulator proteins, and drug resistance in the fungal pathogen Candida auris 2019-9-10 Standardization and validation of real time PCR assays for the diagnosis of histoplasmosis using three molecular targets in an animal model 2017-12-29 Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides 2016-9-1 From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity 2016-4-1 The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia 2015-1-1 Genome Update of the Dimorphic Human Pathogenic Fungi Causing Paracoccidioidomycosis 2014-12-4 The complex task of choosing a de novo assembly: Lessons from fungal genomes 2014-12-1 The eukaryotic genome, its reads, and the unfinished assembly 2013-7-11 GC3 of genes can be used as a proxy for isochore base composition: A reply to Elhaik et al. 2011-1-1 GC level and expression of human coding sequences 2008-3-14 Human chromosomal bands: Nested structure, high-definition map and molecular basis 2007-2-1 Simple proteomic checks for detecting noncoding RNA 2007-2-1 An isochore map of human chromosomes 2006-4-1 Compositional properties of human cDNA libraries: Practical implications 2006-10-16 Density gradient ultracentrifugation and whole genome sequences: Fine-tuning the correspondence 2006-1-1 How not to search for isochores: A reply to Cohen et al 2005-12-1 The new genes of rice: A closer look 2004-6-1 Incorrectly predicted genes in rice? 2004-5-26 Quantifying intrachromosomal GC heterogeneity in prokaryotic genomes 2004-5-26 Representing GC variation along eukaryotic chromosomes 2004-5-26 Compositional gene landscapes in vertebrates 2004-5-1 Inaccurate reconstruction of ancestral GC levels creates a “vanishing isochores“ effect 2004-5-1 Using analytical ultracentrifugation to study compositional variation in vertebrate genomes 2003-8-1 Compositional features of eukaryotic genomes for checking predicted genes. 2003-3-1 GC3 heterogeneity and body temperature in vertebrates 2003-10-23 LDH-A and Α-actin as tools to assess the effects of temperature on the vertebrate genome 2003-10-23 The correlation between GC3 and hydropathy in human genes 2003-10-23 Compositional patterns in reptilian genomes 2002-8-7 A compact view of isochores in the draft human genome sequence 2002-1-30 Compositional heterogeneity within and among isochores in mammalian genomes: I. CsCl and sequence analyses 2001-10-3 Compositional heterogeneity within and among isochores in mammalian genomes: I. CsCl and sequence analyses 2001-10-3 Standard deviations and correlations of GC levels in DNA sequences 2001-10-3 The isochores in human chromosomes 21 and 22 2001-1-1 Diversity and phylogenetic implications of CsCl profiles from rodent DNAs 2000-1-1 Long non-stop reading frames on the antisense strand of heat shock protein 70 genes and prion protein (PrP) genes are conserved between species 1997-12-1 The gene distribution of the human genome 1996-9-26 Human coding and noncoding DNA: Compositional correlations 1996-2-1 Periodicity of eight nucleotides in purine distribution around human genomic CpG dinucleotides 1995-3-1 Short Introns Interrupting the Oct-2 POU Domain May Prevent Recombination between POU Family Genes without Interfering with Potential POU Domain ‘Shuffling’ in Evolution 1994-1-1 Evidence for erosion of mouse CpG islands during mammalian evolution 1993-11-1 The design and implementation of a computing cluster system for genomic and bioinformatic analysis Understanding regional genomic variation associated with risk and etiology of chronic aging diseases chapter Contexto genético de la hipertensión arterial. 15-36. 2022-1-1 Conceptos de bioinformática de genomas para estudiar las micosis. 657-677. 2018-11-15 conference poster P155 Gallstone aetiologies and bacteria: a multi-site microbiome study of 51 Colombian patients 2023-6-1 Haplotype landscapes of genes associated with gallstone formation 2020-6-1 Limits to sequencing and de novo assembly: Classic benchmark sequences for optimizing fungal NGS designs. 221-230. 2014-1-1 editorial article Proto-oncogenes, unlike 'harmless' genes, tend to be dispersed in the human genome: Selection against out-of-register recombination? 1999-1-1 comment Erratum: Simple proteomic checks for detecting noncoding RNA (Proteomics 7,3 (361-363) DOI: 10.1002/pmic.200600813). 1560. 2007-5-1 letter COVID-19 severity, miR-21 targets, and common human genetic variation. Letter regarding the article 'Circulating cardiovascular microRNAs in critically ill COVID-19 patients'. 1986-1987. 2021-1-1 Toward Multiple SNP Motif Analyses of Loci Associated With Phenotypic Traits. 1539-1540. 2017-9-19 Transposable elements encoding functional proteins: Pitfalls in unprocessed genomic data?. 252-253. 2002-7-17 Isochores: Dream or reality?. 237. 2002-6-1 Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17. 175-177. 2002-1-30 abstract Application of real-time PCR assays for the diagnosis of histoplasmosis using three molecular targets in human FFPE tissues and whole-blood. S1-S159. 2018-6-5
principal investigator on Genomic correlates of virulence and morphological phase transitions in pathogenic Onygenales fungi 2018-02-14 - 2022-12-31 Evaluation of a molecular and immunological test for the diagnosis of histoplasmosis (Protocol 4250) 2017-01-02 - 2022-12-31 missing activity missing activity
co-principal investigator on Understanding the etiology of human gallstone disease via microbiome analysis of patients from Colombia and in silico mining of global data 2019-04-22 - 2022-10-30
Educational Training Background 1985, Theorical Physics, Teologiska Högskolan Stockholm 2000, Doctor de La Especialidad Genética Humana, Université Paris Diderot - Paris 7
Last degree obtained Doctorado en Ciencias de la Vida – Genética Humana, Université Paris Diderot - Paris 7